Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| opine oxidase subunit a | ATY41_01690 | Not Available | Negative | 476386 - 477840 | 50524.6 |
| sarcosine oxidase subunit alpha | ATY41_01695 | Not Available | Negative | 477842 - 478108 | 9471.28 |
| dihydrodipicolinate synthase family protein | ATY41_01705 | Not Available | Negative | 479355 - 480287 | 33345.6 |
| sodium:proton antiporter | ATY41_01710 | Not Available | Negative | 480334 - 481806 | 50427.5 |
| xre family transcriptional regulator | ATY41_01715 | Not Available | Positive | 482011 - 482547 | 19155.9 |
| hypothetical protein | ATY41_01720 | Not Available | Positive | 482609 - 482908 | 10198.2 |
| alanine racemase | ATY41_01725 | Not Available | Negative | 483043 - 484155 | 38422.0 |
| alanine racemase | ATY41_01730 | Not Available | Negative | 484152 - 484862 | 24659.7 |
| hypothetical protein | ATY41_01735 | Not Available | Negative | 484898 - 485134 | 8595.93 |
| dna topoisomerase iv subunit b | ATY41_01740 | Not Available | Positive | 485348 - 487432 | 75376.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
