Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoate-protein ligase b | ATY41_01635 | Not Available | Negative | 463775 - 464449 | 23846.4 |
| hypothetical protein | ATY41_01640 | Not Available | Negative | 464617 - 465330 | 24977.7 |
| hypothetical protein | ATY41_01645 | Not Available | Positive | 465433 - 465942 | 18008.7 |
| dihydrolipoamide succinyltransferase | ATY41_01650 | Not Available | Negative | 465990 - 467402 | 47783.8 |
| dihydrolipoamide dehydrogenase | ATY41_01655 | Not Available | Negative | 467489 - 468862 | 48442.1 |
| aminopeptidase | ATY41_01660 | Not Available | Negative | 468967 - 470457 | 50348.0 |
| hypothetical protein | ATY41_01665 | Not Available | Positive | 470561 - 471490 | 34434.8 |
| rna polymerase subunit sigma | ATY41_01675 | Not Available | Positive | 473099 - 474370 | 46518.9 |
| udp-n-acetylmuramyl tripeptide synthetase | ATY41_01680 | Not Available | Positive | 474375 - 475649 | 45336.8 |
| cobyric acid synthase | ATY41_01685 | Not Available | Positive | 475646 - 476362 | 24815.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
