Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron abc transporter atp-binding protein | ATY41_10020 | Not Available | Negative | 452365 - 452964 | 20287.0 |
| arginine--trna ligase | ATY41_10025 | Not Available | Positive | 453052 - 454740 | 60766.5 |
| hypothetical protein | ATY41_10035 | Not Available | Negative | 455727 - 456050 | 11239.4 |
| hypothetical protein | ATY41_10040 | Not Available | Negative | 456108 - 456815 | 25656.7 |
| hypothetical protein | ATY41_10045 | Not Available | Negative | 456891 - 458114 | 42569.9 |
| hypothetical protein | ATY41_10050 | Not Available | Negative | 458111 - 458458 | 12472.3 |
| glutamine synthetase | ATY41_01615 | Not Available | Negative | 459090 - 460514 | 52997.3 |
| transporter | ATY41_01620 | Not Available | Positive | 461463 - 461888 | 15392.0 |
| hypothetical protein | ATY41_01625 | Not Available | Negative | 462003 - 462701 | 25330.4 |
| lipoyl synthase | ATY41_01630 | Not Available | Negative | 462789 - 463778 | 37041.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
