Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts lactose transporter subunit iic | ATY41_09945 | Not Available | Positive | 435343 - 437406 | 69568.1 |
| hypothetical protein | ATY41_09950 | Not Available | Positive | 437435 - 437827 | 14049.8 |
| hypothetical protein | ATY41_09955 | Not Available | Positive | 437905 - 438588 | 24879.1 |
| hypothetical protein | ATY41_09960 | Not Available | Negative | 438861 - 439148 | 10043.8 |
| hypothetical protein | ATY41_09965 | Not Available | Positive | 439194 - 439562 | 13171.5 |
| glycerate kinase | ATY41_09970 | Not Available | Negative | 439847 - 440989 | 38121.6 |
| xylose isomerase | ATY41_09980 | Not Available | Negative | 442277 - 443077 | 29022.7 |
| hypothetical protein | ATY41_09985 | Not Available | Negative | 443074 - 443391 | 11329.3 |
| transporter | ATY41_10000 | Not Available | Positive | 445848 - 446711 | 31485.3 |
| rok family transcriptional regulator | ATY41_10005 | Not Available | Positive | 446780 - 447925 | 39416.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
