Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_09880 | Not Available | Positive | 424664 - 425029 | 12083.4 |
| carbon storage regulator | ATY41_09885 | Not Available | Positive | 425066 - 425323 | 9363.32 |
| hypothetical protein | ATY41_09890 | Not Available | Negative | 425669 - 425917 | 9504.72 |
| enoyl-coa hydratase | ATY41_09900 | Not Available | Negative | 427464 - 428249 | 27806.4 |
| hypothetical protein | ATY41_09910 | Not Available | Negative | 429231 - 429953 | 24908.1 |
| nad-dependent dehydratase | ATY41_09920 | Not Available | Negative | 430944 - 431939 | 36494.1 |
| methionine sulfoxide reductase b | ATY41_09925 | Not Available | Positive | 432188 - 432655 | 17236.8 |
| methionine sulfoxide reductase a | ATY41_09930 | Not Available | Positive | 432652 - 433161 | 19049.1 |
| d-beta-d-heptose 1-phosphate adenosyltransferase | ATY41_09935 | Not Available | Positive | 433581 - 434366 | 27097.8 |
| 1-phosphofructokinase | ATY41_09940 | Not Available | Positive | 434363 - 435310 | 31655.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
