Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_09770 | Not Available | Positive | 408926 - 409744 | 29662.4 |
| hypothetical protein | ATY41_09775 | Not Available | Positive | 409976 - 410803 | 28077.2 |
| hypothetical protein | ATY41_09780 | Not Available | Positive | 410921 - 411115 | 6317.65 |
| hypothetical protein | ATY41_09785 | Not Available | Negative | 411118 - 411330 | 7461.18 |
| hypothetical protein | ATY41_09790 | Not Available | Positive | 411314 - 412123 | 26303.6 |
| hypothetical protein | ATY41_09800 | Not Available | Positive | 412804 - 413079 | 9993.96 |
| flagellar basal-body rod protein flgc | ATY41_09810 | Not Available | Positive | 413638 - 413994 | 12646.8 |
| hypothetical protein | ATY41_09815 | Not Available | Positive | 413994 - 414308 | 10368.3 |
| flagellar m-ring protein flif | ATY41_09820 | Not Available | Positive | 414308 - 415633 | 45123.2 |
| flagellar motor switch protein flig | ATY41_09825 | Not Available | Positive | 415944 - 416903 | 34761.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
