Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peroxiredoxin | ATY41_09720 | Not Available | Negative | 398275 - 398700 | 14290.7 |
| 4-hydroxy-tetrahydrodipicolinate synthase | ATY41_09725 | Not Available | Positive | 398916 - 399896 | 34372.2 |
| ribonuclease | ATY41_09730 | Not Available | Positive | 399965 - 401641 | 60154.8 |
| cell division protein ftsk | ATY41_09735 | Not Available | Positive | 401950 - 404739 | 99095.9 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | ATY41_09740 | Not Available | Positive | 404747 - 405364 | 21937.2 |
| damage-inducible protein cina | ATY41_09745 | Not Available | Positive | 405351 - 405875 | 17580.1 |
| xre family transcriptional regulator | ATY41_09750 | Not Available | Positive | 406023 - 406334 | 11231.6 |
| signal transduction histidine kinase | ATY41_09755 | Not Available | Positive | 406403 - 406627 | 7707.16 |
| dna recombination/repair protein reca | ATY41_09760 | Not Available | Positive | 406796 - 407869 | 37948.6 |
| hypothetical protein | ATY41_09765 | Not Available | Positive | 408099 - 408509 | 14805.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
