Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinyldiaminopimelate transaminase | ATY41_09665 | Not Available | Positive | 386080 - 387198 | 39670.1 |
| type ii citrate synthase | ATY41_09670 | Not Available | Positive | 387389 - 388666 | 46922.0 |
| alcohol dehydrogenase | ATY41_09680 | Not Available | Positive | 391845 - 392789 | 34013.8 |
| tetr family transcriptional regulator | ATY41_09685 | Not Available | Negative | 392793 - 393377 | 21520.7 |
| zinc protease | ATY41_09690 | Not Available | Positive | 393563 - 394912 | 47777.2 |
| histidine phosphatase | ATY41_09695 | Not Available | Positive | 394946 - 395548 | 21913.3 |
| padr family transcriptional regulator | ATY41_09700 | Not Available | Negative | 395555 - 396049 | 17830.1 |
| 4-hydroxy-tetrahydrodipicolinate reductase | ATY41_09705 | Not Available | Positive | 396093 - 396872 | 26759.1 |
| hypothetical protein | ATY41_09710 | Not Available | Positive | 396909 - 397340 | 15698.4 |
| nucleoside-diphosphate sugar epimerase | ATY41_09715 | Not Available | Negative | 397354 - 398244 | 31422.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
