Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_09605 | Not Available | Negative | 371649 - 372275 | 22304.2 |
| glutathione abc transporter atp-binding protein | ATY41_09610 | Not Available | Positive | 372344 - 374200 | 67098.3 |
| abc transporter substrate-binding protein | ATY41_09615 | Not Available | Positive | 374544 - 376097 | 55436.1 |
| abc transporter permease | ATY41_09620 | Not Available | Positive | 376161 - 377090 | 33227.6 |
| gtp-binding protein typa | ATY41_09635 | Not Available | Positive | 379709 - 381625 | 69780.0 |
| peroxidase | ATY41_09640 | Not Available | Negative | 381737 - 383047 | 45519.4 |
| pbrt family lead (pb2+) uptake porter | ATY41_09645 | Not Available | Negative | 383055 - 384233 | 41479.3 |
| high-affinity fe2+/pb2+ permease | ATY41_09650 | Not Available | Negative | 384305 - 385171 | 30102.1 |
| hypothetical protein | ATY41_09655 | Not Available | Positive | 385298 - 385672 | 12258.5 |
| ferredoxin | ATY41_09660 | Not Available | Positive | 385758 - 386078 | 11652.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
