Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_09525 | Not Available | Negative | 350704 - 351669 | 34662.5 |
| cysteine desulfurase | ATY41_09535 | Not Available | Negative | 353451 - 354596 | 38582.6 |
| nicotinate-nucleotide pyrophosphorylase | ATY41_09540 | Not Available | Negative | 354593 - 355453 | 29715.5 |
| quinolinate synthetase | ATY41_09550 | Not Available | Negative | 356952 - 358247 | 46426.3 |
| 3-oxoacyl-acp reductase | ATY41_09560 | Not Available | Negative | 359558 - 360346 | 26660.8 |
| tetr family transcriptional regulator | ATY41_09565 | Not Available | Negative | 360432 - 361007 | 21157.2 |
| caax protease | ATY41_09585 | Not Available | Negative | 366002 - 366796 | 29030.7 |
| abc transporter substrate-binding protein | ATY41_09590 | Not Available | Positive | 367079 - 368866 | 63053.8 |
| abc transporter permease | ATY41_09595 | Not Available | Positive | 369059 - 370591 | 54558.3 |
| abc transporter permease | ATY41_09600 | Not Available | Positive | 370591 - 371601 | 36832.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
