Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine protease | ATY41_07985 | Not Available | Positive | 19747 - 21396 | 53714.9 |
| glycosyl transferase family 2 | ATY41_07990 | Not Available | Positive | 21519 - 22562 | 37831.8 |
| transferase | ATY41_07995 | Not Available | Positive | 22565 - 23383 | 29066.9 |
| glycosyl transferase | ATY41_08000 | Not Available | Positive | 23376 - 24257 | 32375.0 |
| hypothetical protein | ATY41_08010 | Not Available | Negative | 25052 - 25282 | 7844.34 |
| transposase | ATY41_08030 | Not Available | Positive | 28444 - 29553 | 40755.4 |
| hypothetical protein | ATY41_08035 | Not Available | Negative | 29621 - 30214 | 21509.7 |
| aaa family atpase | ATY41_08040 | Not Available | Negative | 30584 - 31384 | 29758.5 |
| transposase | ATY41_08045 | Not Available | Negative | 31381 - 33054 | 61684.5 |
| hypothetical protein | ATY41_08055 | Not Available | Positive | 34647 - 35525 | 30986.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
