Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_09370 | Not Available | Positive | 321022 - 321399 | 13322.7 |
| tetr family transcriptional regulator | ATY41_09375 | Not Available | Negative | 321380 - 321895 | 18032.5 |
| bioy family transporter | ATY41_09380 | Not Available | Positive | 322047 - 322688 | 21704.2 |
| acetyl-coa acetyltransferase | ATY41_09390 | Not Available | Positive | 323736 - 324851 | 35767.8 |
| energy-coupling factor abc transporter atp-binding protein | ATY41_09395 | Not Available | Positive | 324848 - 325534 | 24292.2 |
| cobalt abc transporter permease | ATY41_09400 | Not Available | Positive | 325528 - 326139 | 21234.5 |
| hypothetical protein | ATY41_09405 | Not Available | Positive | 326136 - 326489 | 12636.0 |
| hypothetical protein | ATY41_09410 | Not Available | Positive | 326669 - 327157 | 17616.5 |
| divalent metal cation transporter | ATY41_09415 | Not Available | Negative | 327785 - 329032 | 41669.2 |
| lytr family transcriptional regulator | ATY41_09420 | Not Available | Positive | 329251 - 330495 | 43907.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
