Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | ATY41_09320 | Not Available | Negative | 309609 - 311849 | 81727.4 |
| dead/deah box helicase | ATY41_09325 | Not Available | Positive | 312026 - 313621 | 55178.4 |
| hypothetical protein | ATY41_09330 | Not Available | Positive | 313680 - 314237 | 19630.7 |
| hypothetical protein | ATY41_09335 | Not Available | Positive | 314270 - 314482 | 7404.23 |
| adp-ribose pyrophosphatase | ATY41_09340 | Not Available | Negative | 314500 - 315081 | 20932.2 |
| phospholipase | ATY41_09345 | Not Available | Positive | 315195 - 315845 | 23376.8 |
| hypothetical protein | ATY41_09350 | Not Available | Negative | 316128 - 316322 | 6730.0 |
| hypothetical protein | ATY41_09355 | Not Available | Positive | 316559 - 318130 | 54525.6 |
| dna glycosylase | ATY41_09360 | Not Available | Positive | 318140 - 318925 | 28740.4 |
| lytr family transcriptional regulator | ATY41_09365 | Not Available | Positive | 319116 - 320783 | 56927.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
