Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_09250 | Not Available | Positive | 288366 - 288554 | 6532.98 |
| dna-directed rna polymerase subunit beta' | ATY41_09260 | Not Available | Negative | 290230 - 294105 | 142382.0 |
| dna-directed rna polymerase subunit beta | ATY41_09265 | Not Available | Negative | 294153 - 297650 | 128143.0 |
| spermine synthase | ATY41_09270 | Not Available | Positive | 298001 - 298867 | 30636.9 |
| hypothetical protein | ATY41_09275 | Not Available | Negative | 298906 - 299523 | 22012.7 |
| hypothetical protein | ATY41_09285 | Not Available | Negative | 300193 - 300654 | 16908.9 |
| hypothetical protein | ATY41_09290 | Not Available | Negative | 300890 - 301168 | 9610.59 |
| hypothetical protein | ATY41_09295 | Not Available | Negative | 302118 - 304340 | 76821.3 |
| hypothetical protein | ATY41_09300 | Not Available | Negative | 304234 - 307104 | 95692.7 |
| hypothetical protein | ATY41_09315 | Not Available | Positive | 308862 - 309551 | 23934.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
