Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_09185 | Not Available | Positive | 274611 - 275057 | 15901.8 |
| nad(p)-dependent oxidoreductase | ATY41_09195 | Not Available | Positive | 277327 - 278196 | 29966.4 |
| hypothetical protein | ATY41_09200 | Not Available | Negative | 278284 - 278919 | 22427.0 |
| class ii fructose-bisphosphate aldolase | ATY41_09205 | Not Available | Negative | 278950 - 279975 | 36228.7 |
| fructose 1,6-bisphosphatase | ATY41_09210 | Not Available | Positive | 280179 - 281180 | 34712.4 |
| dna recombinase | ATY41_09215 | Not Available | Negative | 281335 - 282756 | 50949.4 |
| mfs transporter | ATY41_09220 | Not Available | Negative | 282806 - 284167 | 48107.8 |
| dna polymerase iii subunit epsilon | ATY41_09225 | Not Available | Negative | 284313 - 284891 | 20365.9 |
| gtp-binding protein | ATY41_09235 | Not Available | Positive | 285689 - 286759 | 37868.1 |
| hypothetical protein | ATY41_09245 | Not Available | Positive | 287619 - 288305 | 23179.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
