Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_09135 | Not Available | Positive | 264245 - 265366 | 39054.5 |
| atp-binding protein | ATY41_09140 | Not Available | Positive | 265629 - 266927 | 47115.7 |
| hypothetical protein | ATY41_09145 | Not Available | Positive | 267217 - 267459 | 7615.27 |
| class ii fumarate hydratase | ATY41_09150 | Not Available | Negative | 267611 - 268969 | 47322.8 |
| carbonic anhydrase | ATY41_09155 | Not Available | Negative | 269054 - 269722 | 22960.5 |
| hypothetical protein | ATY41_09160 | Not Available | Negative | 269722 - 270378 | 23083.9 |
| exodeoxyribonuclease vii small subunit | ATY41_09165 | Not Available | Negative | 270375 - 270653 | 9608.12 |
| exodeoxyribonuclease vii large subunit | ATY41_09170 | Not Available | Negative | 270655 - 271962 | 46930.3 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | ATY41_09175 | Not Available | Positive | 272024 - 273070 | 37961.2 |
| hypothetical protein | ATY41_09180 | Not Available | Negative | 273581 - 274312 | 23886.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
