Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division protein ftsw | ATY41_09080 | Not Available | Negative | 253649 - 254989 | 46431.3 |
| hypothetical protein | ATY41_09085 | Not Available | Positive | 256164 - 256514 | 12291.5 |
| hypothetical protein | ATY41_09090 | Not Available | Positive | 256799 - 257299 | 16804.5 |
| hypothetical protein | ATY41_09095 | Not Available | Positive | 257790 - 257975 | 6455.57 |
| permease | ATY41_09100 | Not Available | Positive | 258349 - 259590 | 43334.3 |
| threonine dehydratase | ATY41_09105 | Not Available | Positive | 259635 - 260894 | 43319.2 |
| transcription elongation factor grea | ATY41_09110 | Not Available | Negative | 260967 - 261458 | 17377.3 |
| hypothetical protein | ATY41_09120 | Not Available | Positive | 262205 - 262468 | 9319.23 |
| hemolysin iii | ATY41_09125 | Not Available | Negative | 262483 - 263229 | 26895.8 |
| udp pyrophosphate synthase | ATY41_09130 | Not Available | Positive | 263381 - 264175 | 28997.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
