Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family transcriptional regulator | ATY41_09005 | Not Available | Positive | 238255 - 239283 | 36036.4 |
| sugar abc transporter permease | ATY41_09015 | Not Available | Positive | 240290 - 241126 | 30241.0 |
| hypothetical protein | ATY41_09020 | Not Available | Positive | 241161 - 242456 | 45709.4 |
| ribokinase | ATY41_09035 | Not Available | Positive | 244917 - 245858 | 31287.4 |
| hypothetical protein | ATY41_09040 | Not Available | Positive | 246554 - 246901 | 12113.6 |
| zinc-binding protein | ATY41_09050 | Not Available | Positive | 248053 - 248424 | 13948.6 |
| hypothetical protein | ATY41_09055 | Not Available | Negative | 248428 - 249906 | 49736.6 |
| hypothetical protein | ATY41_09060 | Not Available | Positive | 249957 - 250697 | 24721.0 |
| hypothetical protein | ATY41_09065 | Not Available | Positive | 250922 - 251488 | 21120.2 |
| hypothetical protein | ATY41_09075 | Not Available | Negative | 252428 - 253639 | 45627.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
