Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron abc transporter | ATY41_08955 | Not Available | Positive | 227953 - 228942 | 32622.9 |
| abc transporter | ATY41_08960 | Not Available | Positive | 228947 - 229750 | 27933.0 |
| histidine--trna ligase | ATY41_08965 | Not Available | Positive | 229841 - 231136 | 45800.2 |
| transposase | ATY41_08970 | Not Available | Negative | 231196 - 231879 | 25282.6 |
| enolase | ATY41_08975 | Not Available | Positive | 231944 - 233224 | 45230.2 |
| hypothetical protein | ATY41_08980 | Not Available | Positive | 233539 - 234072 | 19047.8 |
| septum formation initiator family protein | ATY41_08985 | Not Available | Positive | 234069 - 234581 | 17760.0 |
| peptidase s8 | ATY41_08990 | Not Available | Positive | 234560 - 235852 | 43899.1 |
| nadh dehydrogenase | ATY41_08995 | Not Available | Positive | 235892 - 237313 | 51280.7 |
| hypothetical protein | ATY41_09000 | Not Available | Negative | 237469 - 238050 | 20333.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
