Leifsonia xyli subsp. xyli strain gdw1

BacilliNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Leifsonia

Description

Leifsonia xyli subsp. xyli strain gdw1 is a Gram-positive, aerobic bacterium characterized by its bacilli shape and a single replicon. This strain thrives in the xylem habitat, exhibiting a mesophilic temperature range with an optimal growth temperature of 20°C. Notably, it is a non-motile organism that engages in a free-living biotic relationship. This strain is associated with several host plants, including Oryza sativa (rice), Zea mays subsp. mays (maize), and Cynodon dactylon (Bermudagrass). One significant health effect linked to Leifsonia xyli subsp. xyli is ratoon stunting disease, a condition that adversely affects the growth and yield of these crops. Understanding the ecological role of Leifsonia xyli subsp. xyli strain gdw1 is crucial, especially considering its impact on agricultural systems. The strain's presence in the xylem indicates its potential involvement in plant health and disease dynamics. Ratoon stunting disease can lead to reduced crop productivity, illustrating the importance of monitoring and managing this pathogen in agricultural practices. The strain's specific association with key crops highlights its relevance in the context of food security and sustainable agriculture.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusLeifsonia
SpeciesLeifsonia xyli
Strainsubsp. xyli strain gdw1

Profile

Physiology
Gram staining propertiesPositive
ShapeBacilli
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature20
Temperature rangeMesophilic
Habitatxylem
Biotic relationshipFree living
Host(s)Oryza sativa, Zea mays subsp. mays, Cynodon dactylon
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Leifsonia xyli subsp. xyli strain gdw1


Gene Summary

Adenine Count

316022 bp

Thymine Count

319337 bp

Guanine Count

659667 bp

Cytosine Count

662381 bp

Genome Length

1957407 bp

Protein-coding Genes

1617 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease phATY41_07930Not AvailableNegative9579 - 1033426520.6
glutamate racemaseATY41_07935Not AvailableNegative10377 - 1119529314.1
nicotinate phosphoribosyltransferaseATY41_07940Not AvailablePositive11230 - 1254046585.2
hypothetical proteinATY41_07945Not AvailableNegative12548 - 1282610249.1
hypothetical proteinATY41_07950Not AvailableNegative12857 - 1438351780.6
abc transporter atp-binding proteinATY41_07955Not AvailableNegative14395 - 1538734591.5
udp-n-acetylglucosamine pyrophosphorylaseATY41_07960Not AvailablePositive15703 - 1639525294.1
sugar abc transporterATY41_07965Not AvailablePositive16470 - 1733332388.2
sugar abc transporterATY41_07970Not AvailablePositive17333 - 1806727207.8
hypothetical proteinATY41_07975Not AvailablePositive18273 - 185249189.84

Displaying genes 11 – 20 of 1617 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

17 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm00015513D-3,5/4-trihydroxycyclohexane-1,2-dioneC6H8O5Chemical structure of 3D-3,5/4-trihydroxycyclohexane-1,2-dioneNot available
Average160.125Da
Monoisotopic160.0371734Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002749ADP-alpha-D-glucoseC16H23N5O15P2Chemical structure of ADP-alpha-D-glucoseNot available
Average587.329Da
Monoisotopic587.0676862Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da
BASm0003296L-ribulose 5-phosphateC5H9O8PChemical structure of L-ribulose 5-phosphateNot available
Average228.094Da
Monoisotopic228.0046014Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da

Displaying 1–10 of 17 metabolites

Health Effects

Health ConditionRelationReference
Ratoon stunting diseaseCausesPMC2516522
Ratoon-stunting diseaseCausesPMC2516522

Displaying health effects 1 – 2 of 2 in total