Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease ph | ATY41_07930 | Not Available | Negative | 9579 - 10334 | 26520.6 |
| glutamate racemase | ATY41_07935 | Not Available | Negative | 10377 - 11195 | 29314.1 |
| nicotinate phosphoribosyltransferase | ATY41_07940 | Not Available | Positive | 11230 - 12540 | 46585.2 |
| hypothetical protein | ATY41_07945 | Not Available | Negative | 12548 - 12826 | 10249.1 |
| hypothetical protein | ATY41_07950 | Not Available | Negative | 12857 - 14383 | 51780.6 |
| abc transporter atp-binding protein | ATY41_07955 | Not Available | Negative | 14395 - 15387 | 34591.5 |
| udp-n-acetylglucosamine pyrophosphorylase | ATY41_07960 | Not Available | Positive | 15703 - 16395 | 25294.1 |
| sugar abc transporter | ATY41_07965 | Not Available | Positive | 16470 - 17333 | 32388.2 |
| sugar abc transporter | ATY41_07970 | Not Available | Positive | 17333 - 18067 | 27207.8 |
| hypothetical protein | ATY41_07975 | Not Available | Positive | 18273 - 18524 | 9189.84 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
