Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anthranilate synthase | ATY41_08900 | Not Available | Positive | 212088 - 213545 | 49814.8 |
| leucine--trna ligase | ATY41_08905 | Not Available | Positive | 213634 - 216234 | 96263.0 |
| hypothetical protein | ATY41_08910 | Not Available | Positive | 216624 - 217055 | 15042.5 |
| hypothetical protein | ATY41_08915 | Not Available | Positive | 217106 - 218362 | 47421.2 |
| hypothetical protein | ATY41_08920 | Not Available | Positive | 218359 - 219066 | 24975.8 |
| hypothetical protein | ATY41_08925 | Not Available | Positive | 219172 - 219447 | 9564.24 |
| hypothetical protein | ATY41_08930 | Not Available | Positive | 219628 - 219912 | 10488.8 |
| transcription-repair coupling factor | ATY41_08935 | Not Available | Positive | 220129 - 223743 | 131331.0 |
| nucleoside triphosphate hydrolase | ATY41_08945 | Not Available | Positive | 225163 - 225810 | 23356.8 |
| iron abc transporter substrate-binding protein | ATY41_08950 | Not Available | Positive | 225879 - 226937 | 36896.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
