Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | ATY41_08850 | Not Available | Positive | 201527 - 202216 | 24477.7 |
| glycine/betaine abc transporter permease | ATY41_08855 | Not Available | Positive | 202213 - 202956 | 25698.1 |
| glycine/betaine abc transporter | ATY41_08860 | Not Available | Positive | 202992 - 203915 | 31965.8 |
| peptidase m48 | ATY41_08865 | Not Available | Negative | 204080 - 205021 | 33326.0 |
| transcriptional regulator | ATY41_08870 | Not Available | Negative | 205026 - 205391 | 13429.0 |
| cytochrome bd ubiquinol oxidase subunit i | ATY41_08875 | Not Available | Positive | 205486 - 206898 | 51869.5 |
| cytochrome c oxidase assembly protein | ATY41_08880 | Not Available | Positive | 206912 - 207931 | 37083.5 |
| abc transporter atp-binding protein | ATY41_08885 | Not Available | Positive | 207933 - 209558 | 56033.4 |
| abc transporter | ATY41_08890 | Not Available | Positive | 209545 - 211272 | 59660.8 |
| hypothetical protein | ATY41_08895 | Not Available | Negative | 211276 - 212070 | 27874.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
