Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-aminobutyrate aminotransferase | ATY41_08800 | Not Available | Negative | 189246 - 190583 | 47322.7 |
| peptidylprolyl isomerase | ATY41_08805 | Not Available | Positive | 190650 - 191615 | 32412.7 |
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | ATY41_08810 | Not Available | Positive | 191621 - 192700 | 37426.6 |
| peptidase | ATY41_08815 | Not Available | Positive | 192783 - 194105 | 46223.4 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | ATY41_08820 | Not Available | Positive | 194177 - 195319 | 40377.7 |
| proline--trna ligase | ATY41_08825 | Not Available | Positive | 195426 - 197198 | 63700.4 |
| hypothetical protein | ATY41_08830 | Not Available | Negative | 197220 - 198242 | 36299.0 |
| acp synthase | ATY41_08835 | Not Available | Negative | 198501 - 199565 | 39001.5 |
| tetr family transcriptional regulator | ATY41_08840 | Not Available | Positive | 199791 - 200447 | 24162.6 |
| abc transporter atp-binding protein | ATY41_08845 | Not Available | Positive | 200637 - 201530 | 31734.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
