Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_06395 | Not Available | Positive | 1927200 - 1927676 | 17148.2 |
| dna topoisomerase iv subunit b | ATY41_06400 | Not Available | Positive | 1927800 - 1929791 | 73685.9 |
| dna gyrase subunit a | ATY41_06405 | Not Available | Positive | 1929835 - 1932411 | 95045.2 |
| hypothetical protein | ATY41_06410 | Not Available | Positive | 1932401 - 1932814 | 14523.2 |
| hypothetical protein | ATY41_06425 | Not Available | Negative | 1933500 - 1933712 | 7888.06 |
| hypothetical protein | ATY41_06430 | Not Available | Negative | 1933734 - 1933931 | 6941.25 |
| hypothetical protein | ATY41_06435 | Not Available | Negative | 1935057 - 1935485 | 16442.9 |
| dna lyase | ATY41_06440 | Not Available | Negative | 1935510 - 1936373 | 30499.8 |
| dna mismatch repair protein mutt | ATY41_06445 | Not Available | Positive | 1936435 - 1936845 | 14404.1 |
| hypothetical protein | ATY41_06450 | Not Available | Negative | 1937049 - 1937606 | 20072.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
