Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atpase | ATY41_08750 | Not Available | Positive | 178031 - 179002 | 34939.0 |
| hypothetical protein | ATY41_08755 | Not Available | Positive | 178999 - 180342 | 46827.8 |
| hypothetical protein | ATY41_08760 | Not Available | Positive | 180339 - 182651 | 81086.7 |
| hypothetical protein | ATY41_08765 | Not Available | Positive | 182648 - 183229 | 20600.3 |
| alanine dehydrogenase | ATY41_08770 | Not Available | Negative | 183281 - 184396 | 38026.7 |
| asparaginase | ATY41_08775 | Not Available | Negative | 184661 - 185713 | 36001.5 |
| 4-aminobutyrate aminotransferase | ATY41_08780 | Not Available | Negative | 185710 - 187065 | 46976.0 |
| peroxiredoxin | ATY41_08785 | Not Available | Positive | 187105 - 187578 | 17052.0 |
| acyl-phosphate glycerol 3-phosphate acyltransferase | ATY41_08790 | Not Available | Negative | 187586 - 188356 | 28083.0 |
| hypothetical protein | ATY41_08795 | Not Available | Negative | 188370 - 189236 | 31507.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
