Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chromosome partitioning protein | ATY41_06340 | Not Available | Negative | 1917530 - 1918447 | 33512.0 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | ATY41_06345 | Not Available | Negative | 1918613 - 1919242 | 22258.4 |
| dna-binding protein | ATY41_06350 | Not Available | Negative | 1919257 - 1919799 | 19426.6 |
| preprotein translocase yidc | ATY41_06355 | Not Available | Negative | 1919811 - 1920785 | 36174.7 |
| membrane protein insertion efficiency factor yidd | ATY41_06360 | Not Available | Negative | 1920796 - 1921107 | 11318.0 |
| 50s ribosomal protein l34 | ATY41_06370 | Not Available | Negative | 1921527 - 1921664 | 5267.57 |
| chromosomal replication initiator dnaa | ATY41_06375 | Not Available | Positive | 1922111 - 1923532 | 53013.2 |
| dna polymerase iii subunit beta | ATY41_06380 | Not Available | Positive | 1923969 - 1925114 | 41113.9 |
| 6-phosphogluconate dehydrogenase | ATY41_06385 | Not Available | Positive | 1925152 - 1926039 | 32016.3 |
| recombinase recf | ATY41_06390 | Not Available | Positive | 1926046 - 1927203 | 42656.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
