Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s18 | ATY41_06285 | Not Available | Negative | 1905799 - 1906062 | 9492.72 |
| single-stranded dna-binding protein | ATY41_06290 | Not Available | Negative | 1906126 - 1906638 | 18202.0 |
| 30s ribosomal protein s6 | ATY41_06295 | Not Available | Negative | 1906643 - 1907029 | 14212.0 |
| cca trna nucleotidyltransferase | ATY41_06300 | Not Available | Negative | 1907330 - 1908766 | 52747.7 |
| hypothetical protein | ATY41_06305 | Not Available | Positive | 1908864 - 1911110 | 76835.6 |
| hypothetical protein | ATY41_06310 | Not Available | Positive | 1911103 - 1912719 | 56065.6 |
| thioredoxin reductase | ATY41_06315 | Not Available | Positive | 1912796 - 1913782 | 34940.2 |
| thioredoxin | ATY41_06320 | Not Available | Positive | 1913796 - 1914122 | 11720.0 |
| gntr family transcriptional regulator | ATY41_06325 | Not Available | Positive | 1914257 - 1915579 | 48373.7 |
| chromosome partitioning protein parb | ATY41_06335 | Not Available | Negative | 1916571 - 1917530 | 34668.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
