Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate dehydrogenase | ATY41_06235 | Not Available | Negative | 1895442 - 1896401 | 34116.2 |
| pyruvate dehydrogenase (acetyl-transferring) e1 component subunit alpha | ATY41_06240 | Not Available | Negative | 1896605 - 1897744 | 42005.9 |
| aminotransferase | ATY41_06245 | Not Available | Negative | 1897749 - 1898858 | 38713.8 |
| hypothetical protein | ATY41_06250 | Not Available | Positive | 1899026 - 1899412 | 13739.7 |
| adenylosuccinate lyase | ATY41_06255 | Not Available | Positive | 1899502 - 1900881 | 50128.4 |
| hypothetical protein | ATY41_06260 | Not Available | Negative | 1900909 - 1901280 | 13012.5 |
| hypothetical protein | ATY41_06265 | Not Available | Negative | 1901277 - 1901876 | 20105.8 |
| hypothetical protein | ATY41_06270 | Not Available | Positive | 1902370 - 1903035 | 24626.3 |
| replicative dna helicase | ATY41_06275 | Not Available | Negative | 1903438 - 1904811 | 50010.0 |
| 50s ribosomal protein l9 | ATY41_06280 | Not Available | Negative | 1905335 - 1905787 | 16070.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
