Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| copper transporter | ATY41_06185 | Not Available | Negative | 1887426 - 1889420 | 71208.9 |
| integration host factor | ATY41_06190 | Not Available | Negative | 1889570 - 1889854 | 9504.32 |
| 30s ribosomal protein s14 | ATY41_06195 | Not Available | Negative | 1890070 - 1890375 | 11409.8 |
| 50s ribosomal protein l33 | ATY41_06200 | Not Available | Negative | 1890378 - 1890545 | 6615.03 |
| 50s ribosomal protein l28 | ATY41_06205 | Not Available | Negative | 1890545 - 1890781 | 8631.59 |
| peptide abc transporter substrate-binding protein | ATY41_06210 | Not Available | Negative | 1890920 - 1891336 | 14610.0 |
| abc transporter permease | ATY41_06215 | Not Available | Negative | 1891346 - 1892203 | 29527.5 |
| abc transporter atp-binding protein | ATY41_06220 | Not Available | Negative | 1892200 - 1893060 | 31256.5 |
| abc transporter substrate-binding protein | ATY41_06225 | Not Available | Negative | 1893057 - 1893953 | 31467.4 |
| branched-chain alpha-keto acid dehydrogenase subunit e2 | ATY41_06230 | Not Available | Negative | 1894040 - 1895398 | 47429.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
