Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenosine deaminase | ATY41_06015 | Not Available | Positive | 1850646 - 1851668 | 36599.4 |
| putrescine importer puup | ATY41_06020 | Not Available | Positive | 1851879 - 1853189 | 46557.9 |
| cold-shock protein | ATY41_06025 | Not Available | Negative | 1853200 - 1854969 | 64450.3 |
| hypothetical protein | ATY41_06040 | Not Available | Negative | 1858313 - 1858819 | 17691.9 |
| arginine-ornithine antiporter | ATY41_06045 | Not Available | Positive | 1858847 - 1860268 | 49671.6 |
| hypothetical protein | ATY41_06050 | Not Available | Negative | 1860354 - 1861217 | 29502.0 |
| hypothetical protein | ATY41_06060 | Not Available | Positive | 1862926 - 1863198 | 10038.6 |
| hypothetical protein | ATY41_06065 | Not Available | Positive | 1863589 - 1863984 | 13458.9 |
| hypothetical protein | ATY41_06070 | Not Available | Negative | 1864063 - 1864380 | 11808.2 |
| hypothetical protein | ATY41_06075 | Not Available | Negative | 1864515 - 1864862 | 12520.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
