Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_05955 | Not Available | Negative | 1841417 - 1842673 | 44482.5 |
| hypothetical protein | ATY41_05965 | Not Available | Positive | 1844355 - 1844630 | 9844.71 |
| hypothetical protein | ATY41_05970 | Not Available | Negative | 1845060 - 1845629 | 20013.5 |
| hypothetical protein | ATY41_05975 | Not Available | Negative | 1845653 - 1845856 | 7386.06 |
| histidinol phosphatase | ATY41_05985 | Not Available | Positive | 1846571 - 1847350 | 27590.3 |
| arsr family transcriptional regulator | ATY41_05990 | Not Available | Negative | 1847357 - 1847725 | 13532.1 |
| abc transporter atp-binding protein | ATY41_05995 | Not Available | Positive | 1847878 - 1848753 | 32216.5 |
| sodium transporter | ATY41_06000 | Not Available | Positive | 1848755 - 1849996 | 44472.7 |
| hypothetical protein | ATY41_06005 | Not Available | Positive | 1850240 - 1850425 | 6201.34 |
| hypothetical protein | ATY41_06010 | Not Available | Positive | 1850470 - 1850649 | 6186.98 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
