Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excisionase | ATY41_05835 | Not Available | Negative | 1815608 - 1815808 | 7582.19 |
| pyridine nucleotide-disulfide oxidoreductase | ATY41_05845 | Not Available | Negative | 1816158 - 1817099 | 32642.1 |
| glutamate--trna ligase | ATY41_05850 | Not Available | Negative | 1817104 - 1818618 | 55433.6 |
| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | ATY41_05855 | Not Available | Negative | 1818647 - 1819432 | 27856.2 |
| branched chain amino acid aminotransferase | ATY41_05865 | Not Available | Negative | 1820509 - 1821642 | 41238.6 |
| 3-isopropylmalate dehydrogenase | ATY41_05870 | Not Available | Negative | 1821665 - 1822738 | 37440.6 |
| 3-phosphoglycerate dehydrogenase | ATY41_05875 | Not Available | Negative | 1823111 - 1824703 | 55618.1 |
| ketol-acid reductoisomerase | ATY41_05885 | Not Available | Negative | 1825679 - 1826707 | 36975.6 |
| acetolactate synthase small subunit | ATY41_05890 | Not Available | Negative | 1826771 - 1827280 | 18436.6 |
| acetolactate synthase 1 catalytic subunit | ATY41_05895 | Not Available | Negative | 1827284 - 1829104 | 64442.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
