Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate dehydrogenase | ATY41_08695 | Not Available | Negative | 158713 - 160065 | 48101.1 |
| amp nucleosidase | ATY41_08700 | Not Available | Positive | 160445 - 161224 | 28809.6 |
| hypothetical protein | ATY41_08705 | Not Available | Positive | 161465 - 163345 | 63354.3 |
| hypothetical protein | ATY41_08710 | Not Available | Negative | 163447 - 164859 | 51926.7 |
| asnc family transcriptional regulator | ATY41_08715 | Not Available | Negative | 164862 - 165344 | 17421.1 |
| gamma-aminobutyraldehyde dehydrogenase | ATY41_08725 | Not Available | Positive | 166886 - 168322 | 51374.7 |
| hypothetical protein | ATY41_08730 | Not Available | Positive | 168354 - 169529 | 39870.4 |
| protein phosphatase | ATY41_08735 | Not Available | Positive | 169526 - 170344 | 28938.0 |
| serine/threonine protein kinase | ATY41_08740 | Not Available | Positive | 170606 - 172021 | 50636.8 |
| fibronectin-like protein | ATY41_08745 | Not Available | Positive | 172036 - 177936 | 203097.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
