Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_05765 | Not Available | Positive | 1802586 - 1802816 | 8235.96 |
| hypothetical protein | ATY41_05770 | Not Available | Positive | 1802813 - 1803442 | 23200.7 |
| hypothetical protein | ATY41_05780 | Not Available | Positive | 1804861 - 1806279 | 51816.2 |
| hypothetical protein | ATY41_05785 | Not Available | Positive | 1806363 - 1807052 | 25287.8 |
| transposase | ATY41_05800 | Not Available | Positive | 1808304 - 1809413 | 40755.4 |
| hypothetical protein | ATY41_05805 | Not Available | Positive | 1809427 - 1809732 | 11477.0 |
| hypothetical protein | ATY41_05810 | Not Available | Positive | 1810240 - 1810788 | 20443.7 |
| hypothetical protein | ATY41_05815 | Not Available | Positive | 1810785 - 1811924 | 41028.9 |
| hypothetical protein | ATY41_05820 | Not Available | Negative | 1811939 - 1812463 | 18500.8 |
| integrase | ATY41_05830 | Not Available | Negative | 1814407 - 1815615 | 44321.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
