Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_05710 | Not Available | Negative | 1791966 - 1792334 | 13746.2 |
| hypothetical protein | ATY41_05715 | Not Available | Negative | 1792295 - 1792963 | 24431.3 |
| hypothetical protein | ATY41_05720 | Not Available | Positive | 1793119 - 1793784 | 24072.4 |
| nad(+) synthetase | ATY41_05725 | Not Available | Negative | 1793805 - 1794644 | 30304.9 |
| lysr family transcriptional regulator | ATY41_05730 | Not Available | Negative | 1794682 - 1795536 | 31265.9 |
| mfs transporter | ATY41_05735 | Not Available | Positive | 1795710 - 1797014 | 45700.9 |
| hypothetical protein | ATY41_05740 | Not Available | Positive | 1797348 - 1797968 | 22572.6 |
| hypothetical protein | ATY41_05745 | Not Available | Negative | 1799420 - 1799755 | 11622.8 |
| hypothetical protein | ATY41_05755 | Not Available | Negative | 1801863 - 1802156 | 10740.8 |
| hypothetical protein | ATY41_05760 | Not Available | Positive | 1802323 - 1802592 | 10003.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
