Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pucr family transcriptional regulator | ATY41_05645 | Not Available | Positive | 1780515 - 1781723 | 43932.5 |
| acp s-malonyltransferase | ATY41_05650 | Not Available | Positive | 1781809 - 1782729 | 31318.5 |
| 3-oxoacyl-acp synthase | ATY41_05655 | Not Available | Positive | 1782741 - 1783751 | 35241.0 |
| acyl carrier protein | ATY41_05660 | Not Available | Positive | 1783794 - 1784045 | 9049.62 |
| 3-oxoacyl-acp synthase | ATY41_05665 | Not Available | Positive | 1784154 - 1785389 | 42788.7 |
| hypothetical protein | ATY41_05670 | Not Available | Negative | 1785636 - 1786328 | 24379.1 |
| acyl-coa thioesterase ii | ATY41_05675 | Not Available | Positive | 1786368 - 1787237 | 31668.3 |
| hypothetical protein | ATY41_05685 | Not Available | Positive | 1787998 - 1788507 | 18282.9 |
| abc transporter atp-binding protein | ATY41_05695 | Not Available | Negative | 1789026 - 1790708 | 62176.9 |
| single-stranded dna-binding protein | ATY41_05705 | Not Available | Negative | 1791340 - 1791780 | 15847.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
