Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphatidate cytidylyltransferase | ATY41_05535 | Not Available | Positive | 1755352 - 1756227 | 30785.1 |
| mfs transporter permease | ATY41_05540 | Not Available | Positive | 1756240 - 1756776 | 20407.2 |
| hypothetical protein | ATY41_05545 | Not Available | Positive | 1756848 - 1757561 | 24732.7 |
| atp/gtp-binding protein | ATY41_05550 | Not Available | Positive | 1757580 - 1757879 | 10957.9 |
| alpha/beta hydrolase | ATY41_05555 | Not Available | Positive | 1757895 - 1758626 | 26643.2 |
| hypothetical protein | ATY41_05560 | Not Available | Negative | 1758637 - 1759674 | 36713.4 |
| hypothetical protein | ATY41_05565 | Not Available | Negative | 1759696 - 1762005 | 84440.5 |
| hypothetical protein | ATY41_05570 | Not Available | Positive | 1762188 - 1764035 | 63932.7 |
| co-chaperone ybbn | ATY41_05575 | Not Available | Positive | 1764059 - 1765012 | 33218.4 |
| glycogen-branching enzyme | ATY41_05580 | Not Available | Negative | 1765057 - 1767258 | 81013.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
