Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_05465 | Not Available | Negative | 1739447 - 1740790 | 47773.8 |
| atp-dependent serine peptidase containing a pdz domain protein | ATY41_05470 | Not Available | Positive | 1740955 - 1742118 | 40014.9 |
| hypothetical protein | ATY41_05475 | Not Available | Positive | 1742295 - 1745192 | 104114.0 |
| histidine kinase | ATY41_05485 | Not Available | Positive | 1745545 - 1746612 | 39168.4 |
| histidinol-phosphatase | ATY41_05495 | Not Available | Positive | 1747617 - 1748360 | 25722.3 |
| arac family transcriptional regulator | ATY41_05500 | Not Available | Positive | 1748509 - 1748901 | 13810.0 |
| 30s ribosomal protein s2 | ATY41_05515 | Not Available | Positive | 1752036 - 1752932 | 32722.8 |
| elongation factor ts | ATY41_05520 | Not Available | Positive | 1752975 - 1753805 | 29256.8 |
| uridylate kinase | ATY41_05525 | Not Available | Positive | 1753919 - 1754632 | 25251.6 |
| ribosome recycling factor | ATY41_05530 | Not Available | Positive | 1754683 - 1755237 | 20219.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
