Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna helicase | ATY41_05410 | Not Available | Negative | 1724324 - 1725799 | 52585.4 |
| hypothetical protein | ATY41_05415 | Not Available | Positive | 1725922 - 1726638 | 25693.9 |
| hypothetical protein | ATY41_05420 | Not Available | Negative | 1726743 - 1727045 | 10552.0 |
| atp-binding protein | ATY41_05425 | Not Available | Negative | 1727056 - 1727280 | 7918.41 |
| atp-dependent dna helicase | ATY41_05430 | Not Available | Positive | 1727388 - 1730510 | 110729.0 |
| atp-dependent dna helicase | ATY41_05435 | Not Available | Positive | 1730537 - 1733914 | 122660.0 |
| macrolide 2'-phosphotransferase | ATY41_05445 | Not Available | Negative | 1734744 - 1735793 | 36428.1 |
| nadh pyrophosphatase | ATY41_05450 | Not Available | Positive | 1735855 - 1736874 | 36876.5 |
| atp-dependent dna helicase | ATY41_05455 | Not Available | Positive | 1736871 - 1738583 | 62540.8 |
| hypothetical protein | ATY41_05460 | Not Available | Negative | 1738842 - 1739360 | 17347.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
