Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase | ATY41_05360 | Not Available | Negative | 1713978 - 1714610 | 22089.2 |
| translocase | ATY41_05365 | Not Available | Positive | 1714692 - 1715054 | 13397.3 |
| hypothetical protein | ATY41_05370 | Not Available | Positive | 1715637 - 1716914 | 47351.4 |
| sodium:proton antiporter | ATY41_05375 | Not Available | Negative | 1716986 - 1718128 | 38968.3 |
| hypothetical protein | ATY41_05380 | Not Available | Negative | 1718121 - 1718660 | 20514.5 |
| magnesium transporter | ATY41_05385 | Not Available | Negative | 1718647 - 1719966 | 47659.7 |
| hypothetical protein | ATY41_05390 | Not Available | Positive | 1720024 - 1720644 | 21678.1 |
| xaa-pro aminopeptidase | ATY41_05395 | Not Available | Negative | 1720663 - 1722279 | 58478.6 |
| metal-dependent phosphoesterase | ATY41_05400 | Not Available | Positive | 1722232 - 1723101 | 30763.2 |
| hypothetical protein | ATY41_05405 | Not Available | Positive | 1723170 - 1724297 | 38550.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
