Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad-linked oxidase | ATY41_05305 | Not Available | Positive | 1701396 - 1702787 | 47552.9 |
| peptidylprolyl isomerase | ATY41_05310 | Not Available | Positive | 1702969 - 1703343 | 13042.3 |
| hypothetical protein | ATY41_05315 | Not Available | Positive | 1703627 - 1703863 | 7801.19 |
| tetr family transcriptional regulator | ATY41_05320 | Not Available | Positive | 1703934 - 1704539 | 21694.0 |
| 30s ribosomal protein s15 | ATY41_05325 | Not Available | Positive | 1704677 - 1704946 | 10304.5 |
| hypothetical protein | ATY41_05330 | Not Available | Positive | 1705021 - 1705581 | 20883.9 |
| polyribonucleotide nucleotidyltransferase | ATY41_05340 | Not Available | Positive | 1707863 - 1710148 | 80924.3 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | ATY41_05345 | Not Available | Negative | 1710235 - 1711233 | 34403.1 |
| succinyl-diaminopimelate desuccinylase | ATY41_05350 | Not Available | Positive | 1711251 - 1712333 | 38603.6 |
| hypothetical protein | ATY41_05355 | Not Available | Positive | 1712302 - 1713549 | 45425.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
