Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_05250 | Not Available | Positive | 1688003 - 1688272 | 9720.95 |
| hypothetical protein | ATY41_05255 | Not Available | Positive | 1688269 - 1689234 | 35249.6 |
| integrase | ATY41_05260 | Not Available | Positive | 1689236 - 1690384 | 42116.8 |
| phosphate transporter | ATY41_05270 | Not Available | Positive | 1693138 - 1694352 | 41100.6 |
| peptidase | ATY41_05275 | Not Available | Positive | 1694349 - 1694681 | 11606.3 |
| nitrate reductase | ATY41_05280 | Not Available | Negative | 1694688 - 1695965 | 43783.7 |
| mfs transporter | ATY41_05285 | Not Available | Positive | 1696179 - 1697531 | 46263.7 |
| trna (guanine-n7)-methyltransferase | ATY41_05290 | Not Available | Positive | 1697605 - 1698288 | 25121.3 |
| class ii fumarate hydratase | ATY41_05295 | Not Available | Positive | 1698589 - 1700103 | 53009.5 |
| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | ATY41_05300 | Not Available | Negative | 1700335 - 1701210 | 31171.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
