Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-phosphofructokinase | ATY41_08635 | Not Available | Positive | 144856 - 145884 | 36509.8 |
| zinc-binding dehydrogenase | ATY41_08640 | Not Available | Positive | 145927 - 146886 | 32908.5 |
| nad-dependent deacetylase | ATY41_08655 | Not Available | Negative | 147976 - 148827 | 30241.9 |
| rrna methyltransferase | ATY41_08660 | Not Available | Positive | 148905 - 149738 | 29766.9 |
| d-alanyl-d-alanine endopeptidase | ATY41_08665 | Not Available | Positive | 149800 - 151008 | 41593.5 |
| daunorubicin resistance protein drrc | ATY41_08670 | Not Available | Positive | 151041 - 153395 | 83196.5 |
| hypothetical protein | ATY41_08675 | Not Available | Positive | 153851 - 154252 | 14180.8 |
| hypothetical protein | ATY41_08680 | Not Available | Negative | 155546 - 155878 | 12081.0 |
| sgnh hydrolase | ATY41_08685 | Not Available | Negative | 155988 - 156773 | 28728.1 |
| hypothetical protein | ATY41_08690 | Not Available | Positive | 156878 - 158665 | 65800.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
