Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| globin | ATY41_05145 | Not Available | Negative | 1669024 - 1669431 | 15475.5 |
| mechanosensitive ion channel protein mscs | ATY41_05150 | Not Available | Negative | 1669433 - 1670605 | 41128.2 |
| luxr family transcriptional regulator | ATY41_05155 | Not Available | Negative | 1670650 - 1671327 | 24049.1 |
| two-component system sensor protein | ATY41_05160 | Not Available | Negative | 1671324 - 1672436 | 39658.9 |
| abc transporter permease | ATY41_05165 | Not Available | Negative | 1672595 - 1673425 | 28513.2 |
| multidrug abc transporter atp-binding protein | ATY41_05170 | Not Available | Negative | 1673422 - 1674333 | 32040.7 |
| aminopeptidase n | ATY41_05175 | Not Available | Negative | 1674443 - 1676986 | 92960.0 |
| ribose-5-phosphate isomerase | ATY41_05180 | Not Available | Positive | 1677093 - 1677581 | 17482.5 |
| dna glycosylase | ATY41_05185 | Not Available | Positive | 1677581 - 1678573 | 36403.8 |
| dna starvation/stationary phase protection protein | ATY41_05190 | Not Available | Negative | 1678748 - 1679230 | 16932.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
