Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_05090 | Not Available | Positive | 1659575 - 1660429 | 30112.6 |
| peptide deformylase | ATY41_05095 | Not Available | Negative | 1660448 - 1661014 | 21107.1 |
| multidrug dmt transporter permease | ATY41_05100 | Not Available | Positive | 1661056 - 1662021 | 33483.1 |
| hypothetical protein | ATY41_05105 | Not Available | Negative | 1662013 - 1663248 | 43820.7 |
| dna mismatch repair protein mutt | ATY41_05115 | Not Available | Negative | 1663599 - 1664084 | 17694.7 |
| nudix hydrolase | ATY41_05120 | Not Available | Positive | 1664161 - 1664619 | 16627.7 |
| 3'-5' exonuclease | ATY41_05125 | Not Available | Positive | 1664736 - 1666397 | 59248.2 |
| hypothetical protein | ATY41_05130 | Not Available | Positive | 1666465 - 1667307 | 29801.0 |
| padr family transcriptional regulator | ATY41_05135 | Not Available | Negative | 1667320 - 1667913 | 21090.1 |
| hypothetical protein | ATY41_05140 | Not Available | Positive | 1668076 - 1668579 | 18500.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
