Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pp_01389 | ATY41_05035 | Not Available | Positive | 1646278 - 1647432 | Not Available |
| deoxyguanosinetriphosphate triphosphohydrolase | ATY41_05040 | Not Available | Positive | 1647422 - 1648684 | 46715.7 |
| hypothetical protein | ATY41_05045 | Not Available | Positive | 1648764 - 1649573 | 27640.7 |
| dna primase | ATY41_05050 | Not Available | Positive | 1649602 - 1651464 | 67007.4 |
| peptide abc transporter substrate-binding protein | ATY41_05055 | Not Available | Positive | 1651667 - 1653283 | 57818.7 |
| peptide abc transporter permease | ATY41_05060 | Not Available | Positive | 1653377 - 1654474 | 39710.3 |
| peptide abc transporter permease | ATY41_05065 | Not Available | Positive | 1654476 - 1655531 | 37252.7 |
| glutathione abc transporter atp-binding protein | ATY41_05070 | Not Available | Positive | 1655528 - 1657216 | 60153.5 |
| oligopeptide transporter | ATY41_05075 | Not Available | Positive | 1657226 - 1658071 | 29924.0 |
| hydroxyacid dehydrogenase | ATY41_05080 | Not Available | Positive | 1658199 - 1659107 | 31568.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
