Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_04950 | Not Available | Negative | 1630009 - 1630359 | 12326.5 |
| hypothetical protein | ATY41_04965 | Not Available | Negative | 1632417 - 1633283 | 30820.4 |
| hypothetical protein | ATY41_04970 | Not Available | Positive | 1633512 - 1633880 | 12620.8 |
| transposase | ATY41_04980 | Not Available | Positive | 1635558 - 1636403 | 31770.6 |
| transposase | ATY41_04985 | Not Available | Negative | 1636413 - 1637024 | 22577.6 |
| hypothetical protein | ATY41_04995 | Not Available | Positive | 1638733 - 1639110 | 13470.2 |
| hypothetical protein | ATY41_05000 | Not Available | Positive | 1639320 - 1639775 | 16988.1 |
| hypothetical protein | ATY41_05005 | Not Available | Positive | 1640370 - 1640657 | 11221.1 |
| transposase | ATY41_05015 | Not Available | Negative | 1641255 - 1642364 | 40755.4 |
| cold-shock protein | ATY41_05020 | Not Available | Positive | 1642917 - 1643138 | 8021.27 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
