Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ATY41_04875 | Not Available | Positive | 1609841 - 1610374 | 19620.2 |
| rna helicase | ATY41_04880 | Not Available | Negative | 1610749 - 1611948 | 42737.2 |
| dehydrogenase | ATY41_04885 | Not Available | Positive | 1612673 - 1614130 | 50754.4 |
| hypothetical protein | ATY41_04890 | Not Available | Negative | 1615022 - 1615327 | 10919.7 |
| hypothetical protein | ATY41_04895 | Not Available | Negative | 1615913 - 1617589 | 59413.6 |
| iclr family transcriptional regulator | ATY41_04900 | Not Available | Negative | 1617739 - 1618494 | 26868.1 |
| laci family transcriptional regulator | ATY41_04920 | Not Available | Positive | 1622933 - 1623973 | 35599.9 |
| sugar abc transporter atp-binding protein | ATY41_04925 | Not Available | Positive | 1624093 - 1625631 | 54809.8 |
| atpase | ATY41_04935 | Not Available | Positive | 1626594 - 1627589 | 32307.3 |
| hypothetical protein | ATY41_04945 | Not Available | Negative | 1628161 - 1629330 | 42603.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
