Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diacylglycerol kinase | ATY41_04825 | Not Available | Negative | 1598334 - 1599293 | 33913.9 |
| hypothetical protein | ATY41_04830 | Not Available | Negative | 1600170 - 1601207 | 35886.7 |
| two-component system response regulator | ATY41_04835 | Not Available | Negative | 1601245 - 1601910 | 24449.4 |
| hypothetical protein | ATY41_04840 | Not Available | Positive | 1602043 - 1602519 | 16150.4 |
| hypothetical protein | ATY41_04845 | Not Available | Positive | 1602516 - 1603622 | 37042.3 |
| abc transporter atp-binding protein | ATY41_04850 | Not Available | Positive | 1603619 - 1604320 | 24661.8 |
| abc transporter permease | ATY41_04855 | Not Available | Positive | 1604317 - 1605528 | 40430.5 |
| glutamate decarboxylase | ATY41_04860 | Not Available | Negative | 1605585 - 1606967 | 49793.9 |
| hypothetical protein | ATY41_04865 | Not Available | Positive | 1607863 - 1609158 | 46415.6 |
| hypothetical protein | ATY41_04870 | Not Available | Positive | 1609155 - 1609844 | 24832.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
