Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Leifsonia
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Leifsonia |
| Species | Leifsonia xyli |
| Strain | subsp. xyli strain gdw1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | xylem |
| Biotic relationship | Free living |
| Host(s) | Oryza sativa, Zea mays subsp. mays, Cynodon dactylon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
316022 bp
Thymine Count
319337 bp
Guanine Count
659667 bp
Cytosine Count
662381 bp
Genome Length
1957407 bp
Protein-coding Genes
1617 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | ATY41_04765 | Not Available | Positive | 1581743 - 1583410 | 57591.5 |
| cobalt abc transporter permease | ATY41_04770 | Not Available | Positive | 1583407 - 1584201 | 28646.6 |
| marr family transcriptional regulator | ATY41_04775 | Not Available | Negative | 1584220 - 1584684 | 16315.6 |
| hypothetical protein | ATY41_04780 | Not Available | Positive | 1585325 - 1587841 | 89397.4 |
| hypothetical protein | ATY41_04785 | Not Available | Positive | 1588062 - 1590380 | 74638.6 |
| hypothetical protein | ATY41_04790 | Not Available | Positive | 1590399 - 1591565 | 37824.0 |
| hypothetical protein | ATY41_04800 | Not Available | Positive | 1592752 - 1593210 | 14530.2 |
| tetr family transcriptional regulator | ATY41_04805 | Not Available | Negative | 1593374 - 1593991 | 21258.6 |
| agmatine deiminase | ATY41_04810 | Not Available | Positive | 1594049 - 1595083 | 37077.6 |
| argininosuccinate synthase | ATY41_04820 | Not Available | Positive | 1596885 - 1598321 | 52263.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Ratoon stunting disease | Causes | PMC2516522 |
| Ratoon-stunting disease | Causes | PMC2516522 |
